Documentation

Journals

  1. [link (pdf)] T. Hirmajer, E. Balsa-Canto and J. R. Banga: DOTcvpSB, a software toolbox for dynamic optimization in systems biology. BMC Bioinformatics 2009, 10:199.

Technical reports

  1. [pdf] T. HIRMAJER, E. BALSA-CANTO, J. R. BANGA: DOTcvpSB: a Matlab Toolbox for Dynamic Optimization in Systems Biology, Technical Report, Instituto de Investigaciones Marinas - CSIC, C/Eduardo Cabello 6, 36208 Vigo, Spain, 2008.

Tutorials

  1. [pdf] Brief Tutorial on using DOTcvpSB (a Matlab Toolbox for Dynamic Optimization in Systems Biology).

Conferences

  1. [poster] T. HIRMAJER, E. BALSA-CANTO, J. R. BANGA: DOTcvp a Software Toolbox for Dynamic Optimization in Systems Biology, ICSB 2008, Gothenburg, Sweden, 22-28.8.2008.

Video demos

All demos are showing the drug displacement problem defined in detail here.
  1. Toolbox installation
  2. Problem introduction into the DOTcvp by template
  3. Problem introduction into the DOTcvp by Graphical User Interface
  4. Optimization run

Other documentation

[click here for more information about GUI]

[the functions dependencies are possible to check on the following web link

Bib reference

If you are using our toolbox to obtain results for a publication, we politely ask you for your support by citation of the following journal:
@Article{dotcvpsb2009,
 author = {Hirmajer, T. and Balsa-Canto, E. and Banga, J. R.},
 title = {DOTcvpSB, a software toolbox for dynamic optimization in systems biology},
 journal = {BMC Bioinformatics},
 volume = {10},
 year = {2009},
 number = {1},
 pages = {199},
 url = {http://www.biomedcentral.com/1471-2105/10/199},
 doi = {10.1186/1471-2105-10-199},
 issn = {1471-2105}
}