Publications

rev 30-Nov-2012

To see the most cited, check Scopus or Google Scholar

If you want reprints or more information e-mail me.

Chronological order

2014

  1. Otero-Muras, I. and J. R. Banga (2014) Multicriteria global optimization for biocircuit design. BMC Systems Biology 8:113. (article)

  2. Otero-Muras, I. and J. R. Banga (2014) Optimization Based Design of Synthetic Oscillators from Standard Biological Parts. In "Computational Methods in Systems Biology", (Editors: Pedro Mendes, Joseph O. Dada, Kieran Smallbone), Lecture Notes in Computer Science, Volume 8859, pp. 225-238. (article)

  3. Gábor, A. and J. R. Banga (2014) Improved Parameter Estimation in Kinetic Models: Selection and Tuning of Regularization Methods. In "Computational Methods in Systems Biology", (Editors: Pedro Mendes, Joseph O. Dada, Kieran Smallbone), Lecture Notes in Computer Science, Volume 8859, pp. 45-60. (article)

  4. Villaverde, A., Ross, J., Morán, F., and Banga, J.R. (2014) MIDER: network inference with mutual information distance and entropy reduction. PloS ONE 9(5):e96732. (article)

  5. Egea JA, Henriques D, Cokelaer T, Villaverde AF, MacNamara A, Danciu DP, Banga JR and Saez-Rodriguez J (2014) MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. BMC Bioinformatics 15:136. (article)

  6. de Hijas-Liste, G.M., E. Klipp, E. Balsa-Canto, J.R. Banga (2014) Global dynamic optimization approach to predict activation in metabolic pathways. BMC Systems Biology 8:1. (article)

  7. Villaverde, A.F. and J.R. Banga (2014) Reverse engineering and identification in systems biology: strategies, perspectives and challenges. J. Royal Soc. Interface 11(91):20130505. (article)

  8. Heermann, R., K. Zigann, S., M. Rodriguez-Fernandez, J.R. Banga, A. Kremling, K. Jung (2014) Dynamics of an Interactive Network Composed of a Bacterial Two-Component System, a Transporter and K+ as Mediator. PLoS ONE 9(2):e89671. (article)

  9. 2013

  10. Becker, K., E. Balsa-Canto, D. Cicin-Sain, A. Hoermann, H. Janssens, J.R. Banga, J. Jaeger (2013) Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in Drosophila melanogaster. PLoS Computational Biology 9(10): e1003281. (article)

  11. Egea, J.A., D. Henriques, T. Cokelaer, A.F. Villaverde, J.R. Banga, J. Saez-Rodriguez (2013) MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. arXiv:1311.5735 . (article)

  12. Gábor, A., K.M. Hangos, G. Szederkényi, J.R. Banga (2013) On the Verification and Correction of Large-Scale Kinetic Models in Systems Biology. Computational Methods in Systems Biology. Lecture Notes in Computer Science 8130:206-219. (article)

  13. Balsa-Canto, E. and J.R. Banga (2013) Optimal Dynamic Experiments. In "Encyclopedia of Systems Biology", W. Dubitzky, O. Wolkenhauer, K.-H. Cho, H. Yokota (Eds.) pp. 1569-1572. (article)

  14. Tuza, Z.A., G. Szederkenyi, K.M. Hangos, A.A. Alonso, J.R. Banga (2013) Computing all Sparse Kinetic Structures for a Lorenz System Using Optimization. Int. Journal of Bifurcation and Chaos 23(8):1350141. (article)

  15. Rodriguez-Fernandez, M., M. Rehberg, A. Kremling, J.R. Banga (2013) Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems. BMC Systems Biology 7:76. (article)

  16. Villaverde, A.F., J. Ross and J. R. Banga (2013) Reverse Engineering Cellular Networks with Information Theoretic Methods. Cells 2(2):306-329.  (article)

  17. 2012

  18. Higuera, C., A.F. Villaverde, J.R. Banga, J. Ross, and F. Morán (2012) Multi-Criteria Optimization of Regulation in Metabolic Networks. PLoS ONE 7(7): e41122.  (article)

  19. Villaverde, A.F., J.A. Egea and J.R. Banga (2012) A cooperative strategy for parameter estimation in large scale systems biology models. BMC Systems Biology 6:75.  (article)

  20. Vilas, C., E. Balsa-Canto, M. S. G. Garcia, J. R. Banga and A. A. Alonso (2012) Dynamic optimization of distributed biological systems using robust and efficient numerical techniques. BMC Systems Biology 6:79.  (article)

  21. Otero-Muras, I., Julio R. Banga and Antonio A. Alonso (2012) Characterizing Multistationarity Regimes in Biochemical Reaction Networks. PLoS ONE 7(7):e39194.  (article)

  22. Szederkenyi G., Banga J.R., Alonso A.A. (2012) CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks. Bioinformatics 28(11):1549-1550.  (article) (software)

  23. Rodriguez-Fernandez, M., Banga, J. R., and Doyle, F. J. (2012) Novel global sensitivity analysis methodology accounting for the crucial role of the distribution of input parameters: application to systems biology models. Int. J. of Robust and Nonlinear Control 22(10):1082-1102.  (article)

  24. Balsa-Canto, E., J.R. Banga, J.A. Egea, A. Fernandez-Villaverde and G.M. de Hijas-Liste (2012) Global optimization in systems biology: stochastic methods and their applications. Advances in Experimental Medicine and Biology 736:409-424.  (article)

  25. 2011

  26. Szederkenyi G., Banga J.R., Alonso A.A. (2011) Inference of complex biological networks: distinguishability issues and optimization-based solutions. BMC Systems Biology 5:177.  (article)

  27. Kothare, M.V. and Banga, J.R. (2011) Editorial - DYCOPS and CAB Special Issue. Journal of Process Control 21(10):1359-1360.  (article)

  28. Chis, Oana, Julio R. Banga, and Eva Balsa-Canto (2011) Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods. PLoS ONE 27(18):2610-2611.  (article)

  29. Chis, Oana, Julio R. Banga, and Eva Balsa-Canto (2011) GenSSI: a software toolbox for structural identifiability analysis of biological models. Bioinformatics 27(18):2610-2611.  (article) (*software*)

  30. Villaverde, A., J. Ross, F. Morán, E. Balsa-Canto, J.R. Banga (2011) Use of a Generalized Fisher Equation for Global Optimization in Chemical Kinetics. Journal of Physical Chemistry A115(30):8426-8436.  (article)

  31. Balsa-Canto, E. and Julio R. Banga (2011) AMIGO, a toolbox for Advanced Model Identification in systems biology using Global Optimization. Bioinformatics 27(16):2311-2313.  (article) (*software*)

  32. De Hijas-Liste, G. M., Balsa-Canto, E., & Banga, J. R. (2011) Prediction of activation of metabolic pathways via dynamic optimization. Computer Aided Chemical Engineering 29:1386-1390.  (article)

  33. Rodriguez-Fernandez, M., Cardelle-Cobas, A., Villamiel, M., & Banga, J. R. (2011) Detailed kinetic model describing new oligosaccharides synthesis using different ß-galactosidases. Journal of Biotechnology 153(3-4):116-124.  (article)

  34. Nicolaï, B. M., Egea, J. A., Scheerlinck, N., Banga, J. R., & Datta, A. K. (2011) Fuzzy finite element analysis of heat conduction problems with uncertain parameters. Journal of Food Engineering 103(1):38-46. 

  35. 2010

  36. Ross, J., A.F. Villaverde, J.R. Banga, S. Vazquez, F. Moran (2010) A generalized Fisher equation and its utility in chemical kinetics. Proc. Natl. Acad. Sci. USA 107(29):12777-12781.  (article)

  37. Georgiadis, Michael C., Julio R. Banga and Efstratios N. Pistikopoulos (Eds) (2010) DYNAMIC PROCESS MODELLING. Wiley-VCH, Weinheim, ISBN-10: 3-527-31684-1.  (BOOK site)

  38. Vera, J., O. Rath, E. Balsa-Canto, J. R. Banga, W. Kolch and Olaf Wolkenhauer (2010) Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models. Molecular BioSystems 6:2174–2191.  (article)

  39. Rodriguez-Fernandez, M. and J.R. Banga (2010). SensSB: A software toolbox for the development and sensitivity analysis of systems biology models. Bioinformatics 26(13):1675-1676. (article) (software)

  40. Sendin, J.O.H., O. Exler & J.R. Banga (2010). Multi-objective mixed integer strategy for the optimisation of biological networks. IET Systems Biology 4(3):236-248. (article)

  41. Balsa-Canto, E., Alonso, A. A., & Banga, J. R. (2010). An iterative identification procedure for dynamic modeling of biochemical networks. BMC Systems Biology 4:11. (article)

  42. Egea, J.A., Martí, R., & Banga, J.R. (2010). An evolutionary method for complex-process optimization. Computers and Operations Research 37(2):315-324. (article)

  43. Balsa-Canto E., J.R. Banga and M.R. García (2010). Dynamic Model Building Using Optimal Identification Strategies, with Applications in Bioprocess Engineering. In "Dynamic Process Modelling", Banga J.R., Georgiadis M., Pistikopoulos E. (eds.), Wiley-VCH, Weinheim.. 

  44. Balsa-Canto, E., Banga, J.R. (2010). Computational Procedures for Model Identification. In "Systems Biology for Signaling Networks", Sangdun Choi (Ed.), (pp: 111-138), Springer. ISBN: 978-1-4419-5796-2. 

  45. Sendin, J. O. H., Alonso, A. A., & Banga, J. R. (2010). Efficient and robust multi-objective optimization of food processing: A novel approach with application to thermal sterilization. Journal of Food Engineering 98(3):317-324. 

  46. 2009

  47. Otero, I, J. R. Banga, A. A. Alonso (2009) Exploring multiplicity conditions in enzymatic reaction networks. Biotechnology Progress 25(3):619-631. (abstract)

  48. Hirmajer, T., E. Balsa-Canto and J. R. Banga (2009) DOTcvpSB, a software toolbox for dynamic optimization in systems biology. BMC Bioinformatics 10:199.  ( PDF ) (**software**)

  49. Rodriguez-Fernandez, M., & Banga, J. R. (2009). Global sensitivity analysis of a biochemical pathway model. Advances in Soft Computing 49, pp. 233-242

  50. Sendín, J.O.H., Alonso, A. A., & Banga, J. R. (2009). Multi-objective optimization of biological networks for prediction of intracellular fluxes. Advances in Soft Computing 49, pp. 197-205. (abstract)

  51. Sendín, J. -. H., Banga, J. R., & Csendes, T. (2009). Extensions of a multistart clustering algorithm for constrained global optimization problems. Industrial and Engineering Chemistry Research 48(6):3014-3023.

  52. Schlüter, M., Egea, J.A., Antelo, L.T., Alonso, A.A., & Banga, J.R. (2009). An extended ant colony optimization algorithm for integrated process and control system design. Industrial and Engineering Chemistry Research 48(14):6723-6738.

  53. Egea, J.A., Balsa-Canto, E., García, M.G., & Banga, J.R. (2009). Dynamic optimization of nonlinear processes with an enhanced scatter search method. Industrial and Engineering Chemistry Research 48(9):4388-4401.

  54. Egea, J. A., Vazquez, E., Banga, J. R., & Martí, R. (2009). Improved scatter search for the global optimization of computationally expensive dynamic models. Journal of Global Optimization 43(2-3):175-190.

  55. Schlüter, M., J. A. Egea, J. R. Banga (2009) Extended ant colony optimization for non-convex mixed integer nonlinear programming. Computers & Operations Research 36(7):2217-2229.

  56. 2008

  57. Antelo, L., O. Exler, J. R. Banga, A. A. Alonso (2008) Optimal Tuning of Thermodynamic-Based Decentralized PI Control Loops: Application to the Tennessee Eastman Process. AIChE J. 54(11):2904-2924.

  58. García, M. R., C. Vilas, J. R. Banga, A. A. Alonso (2008) Exponential Observers for Distributed Tubular (Bio)Reactors. AIChE J. 54(11):2943-2956.

  59. Banga, J.R. and E. Balsa-Canto (2008) Parameter estimation and optimal experimental design. Essays in Biochemistry 45:195–210. (abstract+pdf)

  60. Banga, J.R. (2008) Optimization in computational systems biology. BMC Systems Biology, 2:47. (abstract + PDF)

  61. Balsa-Canto, E., M. Peifer, J.R. Banga, J. Timmer, C. Fleck (2008) Hybrid optimization method with general switching strategy for parameter estimation. BMC Systems Biology, 2:26. (abstract + PDF)

  62. Balsa-Canto, E., A.A. Alonso and J.R. Banga (2008) Computational Procedures for Optimal Experimental Design in Biological Systems. IET Systems Biology 2(4):163-172. (abstract)

  63. Vilas, C., M.R. Garcia, J.R. Banga, A.A. Alonso (2008) Robust Feed-Back Control of Travelling Waves in a Class of Reaction-Diffusion Distributed Biological Systems. Physica D 237(18):2353-2364. (abstract + pdf)

  64. Csendes, T., L. Pal, J.O.H. Sendin, J.R. Banga (2008) The GLOBAL Optimization Method Revisited. Optimization Letters 2(4):445-454. (abstract)

  65. Antelo, L.T., J.R. Banga and A.A. Alonso (2008) Hierarchical design of decentralized control structures for the Tennessee Eastman Process. Computers & Chemical Engineering 32(9):1995-2015. (abstract+pdf)

  66. Exler, O., L.T. Antelo, J.A. Egea, A.A. Alonso and J.R. Banga (2008) A Tabu search-based algorithm for mixed-integer nonlinear problems and its application to integrated process and control system design. Computers & Chemical Engineering, 32(8):1877-1891. (abstract)

  67. Balsa-Canto, E., A.A. Alonso and J.R. Banga (2008) Computing optimal dynamic experiments for model calibration in predictive microbiology. Journal of Food Process Engineering, 31:186-206.

  68. Banga, J.R., E. Balsa-Canto, and A.A. Alonso (2008) Quality and Safety Models and Optimization as Part of Computer-Integrated Manufacturing. Comprehensive Reviews in Food Science and Food Safety, 7 (1):168-174.

  69. Scheerlinck, N., N.H. Berhane, C.G. Moles, J.R. Banga, B.M. Nicolaï (2008) Optimal dynamic heat generation profiles for simultaneous estimation of thermal food properties using a hotwire probe: computation, implementation and validation. Journal of Food Engineering, 84(2):297-306.

  70. 2007

  71. Egea, J.A., Vries, D., Alonso, A.A. and Banga, J.R. (2007) Global optimization for integrated design and control of computationally expensive process models . Industrial and Engineering Chemistry Research 46(26):9148-9157.  (abstract)

  72. Vera, J., E. Balsa-Canto, P. Wellstead, J. R. Banga and O. Wolkenhauer (2007) Power-Law Models of Signal Transduction Pathways. Cellular Signalling 19(7):1531-1541.  (abstract)

  73. Garcia, M.R., C. Vilas, J. R. Banga and A. A. Alonso (2007) Optimal Field Reconstruction of Distributed Process Systems from Partial Measurements. Industrial & Engineering Chemistry Research 46(2):530-539. (abstract)

  74. Vilas, C., M.R. García, J.R. Banga and A.A. Alonso (2007) Robust feed-back control of distributed chemical reaction systems. Chemical Engineering Science 62(11):2941-2957.  (abstract)

  75. Antelo, L.T., I. Otero-Muras, J. R. Banga and A. A. Alonso (2007) A Systematic Approach to Plant-Wide Control Based On Thermodynamics. Computers & Chemical Engineering 31(5-6):677-691. (abstract)

  76. Egea, J.A., M. Rodriguez-Fernandez, J. R. Banga and R. Martí (2007) Scatter Search for chemical and bioprocess optimization. Journal of Global Optimization 37(3):481-503. (abstract)

  77. Balsa-Canto, E., M. Rodriguez-Fernandez and J.R. Banga (2007) Optimal design of dynamic experiments for improved estimation of kinetic parameters of thermal degradation. Journal of Food Engineering 82(2):178-188.  (abstract)

  78. Rodríguez-Fernández, M., E. Balsa-Canto, J. A. Egea and J. R. Banga (2007) Identifiability and Robust Parameter Estimation in Food Process Modeling: Application to a Drying Model. Journal of Food Engineering, 83(3):374-383.  (abstract)

  79. Antelo, L.T., I. Otero-Muras, J. R. Banga and A. A. Alonso (2007) La Teoría de Redes en Ingeniería de Control: Aplicación al Análisis Dinámico y al Control de Procesos. Revista Iberoamericana de Automática e Informática Industrial (RIAI) 4(1):24-34. (pdf)

  80. 2006

  81. García, M.-S.G., E. Balsa-Canto, A. Vande Wouwer and J.R. Banga (2006) Dynamic optimization of a Simulated Moving Bed (SMB) chromatographic separation process. Industrial & Engineering Chemistry Research 45(26): 9033-9041. (abstract)

  82. Rodriguez-Fernandez, M., J. A. Egea and J. R. Banga (2006) Novel Metaheuristic for Parameter Estimation in Nonlinear Dynamic Biological Systems. BMC Bioinformatics 7:483. (PDF) (abstract)

  83. Sendín, J.O.H., I. Otero, A. A. Alonso and J. R. Banga (2006) Improved optimization methods for the multiobjective design of bioprocesses. Industrial & Engineering Chemistry Research 45(25): 8594-8603. (abstract)

  84. Vilas, C., M. R. Garcia, J. R. Banga and A. A. Alonso (2006) Stabilization of Inhomogeneous Patterns in a Diffusion-reaction System under Structural and Parametric Uncertainties. Journal of Theoretical Biology 241 (2): 295-306 (abstract).

  85. Sendin, O. H., J. Vera, N. V. Torres and J. R. Banga (2006) Model Based Optimization of Biochemical Systems Using Multiple Objectives: A Comparison of Several Solution Strategies. Mathematical and Computer Modelling of Dynamical Systems 12 (5): 469-487 (abstract) .

  86. Rodriguez-Fernandez, M., P. Mendes and J. R. Banga (2006) A hybrid approach for efficient and robust parameter estimation in biochemical pathways. BioSystems 83(2-3):248-265. (abstract) (citations)

  87. García, M.-S. G., E. Balsa-Canto, A. A. Alonso and J. R. Banga (2006) Computing optimal operating policies for the food industry. Journal of Food Engineering, 74(1):13-23. (abstract)

  88. Balsa-Canto, E.; Rodríguez-Fernández, M.; Alonso, A.A.; Banga, J.R. (2006) Computational design of optimal dynamic experiments in systems biology: a case study in cell signaling. In: Understanding and Exploiting Systems Biology in Bioprocesses and Biomedicine. (M. Cánovas, J. L. Iborra, A. Manjón eds.), pp. 103-117. Fundación Cajamurcia, Murcia.

  89. Otero-Muras, I.; Banga, J.R.; Alonso, A.A. (2006) A method for detecting bifurcations in biochemical networks. In: Understanding and Exploiting Systems Biology in Bioprocesses and Biomedicine. (M. Cánovas, J. L. Iborra, A. Manjón eds.), pp. 71-78. Fundación Cajamurcia, Murcia.

  90. Vilas, C.; García, M.R.; Banga, J.R.; Alonso, A.A. (2006) Robust Stabilization of Inhomogeneous Patterns in a Reaction-Diffusion Biological Systems. In: Understanding and Exploiting Systems Biology in Bioprocesses and Biomedicine. (M. Cánovas, J. L. Iborra, A. Manjón eds.), pp. 93-100. Fundación Cajamurcia, Murcia.

  91. Antelo, LT; OteroMuras, I; Banga, JR; Alonso, AA (2006) A thermodynamic based plant-wide control design procedure of the Tennessee Eastman process. In: Computer Aided Chemical Engineering, (W. Manquard, C. Pantelides eds.), 1413-1418. Elsevier.

  92. 2005

  93. Banga, J. R., E. Balsa-Canto, M. Rodríguez and A. A. Alonso (2005) Model calibration in Systems Biology. BioForum Europe 9:42-43.

  94. Balsa-Canto, E., A. A. Alonso and J. R. Banga (2005) Dynamic optimization of complex distributed process systems. Chemical Engineering Research and Design 83(A8): 1–6. (abstract)

  95. Banga, J. R., E. Balsa-Canto, C. G. Moles and A. A. Alonso (2005) Dynamic optimization of bioprocesses: Efficient and robust numerical strategies. Journal of Biotechnology 117(4):407-419. (abstract)

  96. Balsa-Canto, E.; Vassiliadis, V. S.; Banga, J. R. (2005) Dynamic Optimization of Single- and Multi-Stage Systems Using a Hybrid Stochastic-Deterministic Method. Industrial and Engineering Chemistry Research 44(5): 1514-1523. (abstract)

  97. Garcia, M.R.; Balsa-Canto, E.; Vilas, C.; Banga, J.R.; Alonso, A.A. (2005) An Efficient Real-Time Dynamic Optimisation Architecture for the Control of Non-Isothermal Tubular Reactors. In: Computer Aided Chemical Engineering, vol. 20, no. B, pp. 1333-1338.

  98. Antelo, LT; OteroMuras, I; Banga, JR; Alonso, AA (2005) A Systematic Approach to Plant-Wide Control Based on Thermodynamics. In: Computer Aided Chemical Engineering, vol. 20, no. B, pp. 1105-1110.

  99. Garcia, MG; Balsa-Canto, E; Alonso, AA; Banga, JR (2005) A Software Toolbox for the Dynamic Optimization of Nonlinear Processes. In: Computer Aided Chemical Engineering, vol. 20, no. A, pp. 121-126.

  100. Rodriguez-Fernandez, M; Alonso, AA; Banga, JR (2005) Robust Parameter Estimation in Nonlinear Dynamic Process Models. In: Computer Aided Chemical Engineering, vol. 20, no. A, pp. 37-42.

  101. 2004

  102. Balsa-Canto, E., J. R. Banga, A. A. Alonso and V. S. Vassiliadis (2004) Dynamic optimization of distributed parameter systems using second order directional derivatives. Industrial & Engineering Chemistry Research 43(21):6756-6765. (abstract)

  103. Balsa-Canto, E., A. A. Alonso and J. R. Banga (2004) Reduced-Order Models for Nonlinear Distributed Process Systems and Their Application in Dynamic Optimization. Industrial & Engineering Chemistry Research 43(13): 3353-3363. (abstract)

  104. Scheerlinck, N., D. Marquenie, P. Verboven, C.G. Moles, J. R. Banga and B. M. Nicolaï (2004) A model based approach to develop periodic thermal treatments for surface decontamination of strawberries. Postharvest Biology and Technology 34(1):39-52. (abstract)

  105. Moles, C.G., J.R. Banga and K. Keller (2004) Solving nonconvex climate control problems: pitfalls and algorithm performances. Applied Soft Computing 5(1):35-44. (abstract) 

  106. Sendín, O.H., Moles, C.G., Alonso, A.A., Banga, J.R. (2004) Multi-Objective Integrated Design and Control using Stochastic Global Optimization Methods. In CACE Book on "Integration of Design and Control", M. Georgiados and P. Seferlis (Eds.), pp. 555-581, Elsevier Science, ISBN: 0-444-51557-7.

  107. Alonso, A. A., I. Kevrekidis, J. R. Banga and C. Frouzakis (2004) Optimal Sensor Location and Reduced Order Observer Design for Distributed Process Systems. Computers and Chemical Engineering 28(1-2):27-35. (abstract)

  108. Alonso, A. A., Carlos V. Fernández and Julio R. Banga (2004) Dissipative Systems: From Physics to Robust Nonlinear Control. Int. Journal of Robust and Nonlinear Control 14(2):157-179. (abstract)

  109. 2003


  110. Moles, C. G., Pedro Mendes and Julio R. Banga (2003) Parameter estimation in biochemical pathways: a comparison of global optimization methods. Genome Research, 13(11):2467-2474. PDF  Supl. info (citations)

  111. Vera, J., Carmen G. Moles, Julio R. Banga and Néstor V. Torres (2003) Integrated non-linear optimization of bioprocesses via linear programming. AIChE Journal 49(12):3173-3187. (abstract)

  112. Banga, J.R., Moles, C.G., Alonso, A.A. (2003) Global optimization of bioprocesses using stochastic and hybrid methods. In "Frontiers In Global Optimization ", C.A. Floudas and P. M. Pardalos, (Eds.), Nonconvex Optimization and Its Applications, vol. 74, pp. 45-70, Kluwer Academic Publishers, ISBN 1-4020-7699-1.

  113. Banga, J. R., E. Balsa-Canto, C. G. Moles and A. A. Alonso (2003) Dynamic Optimization of Bioreactors - a Review. Proc. Ind. Natn. Science Academy, 69A(3-4):257-265. PDF

  114. Moles, C. G., G. Gutierrez, A. A. Alonso and J. R. Banga (2003) Integrated process design and control via global optimization: a wastewater treatment plant case study. Chemical Engineering Research & Design 81:507-517. (abstract)

  115. Banga, J. R.; Balsa-Canto, E.; Moles, C. G.; Alonso, A. A (2003) Improving food processing using modern optimization methods. Trends in Food Science and Technology, 14(4):131-144. (abstract)

  116. Moles, C. G., A. S. Lieber, J. R. Banga and K. Keller (2003) Global optimization of climate control problems using evolutionary and stochastic algorithms . In "Advances in Soft Computing: Engineering Design and Manufacturing ", Benitez, J. M., Cordon, O., Hoffmann, F., Roy, R. (Eds.), p. 331-342, Springer-Verlag, Heidelber.

  117. Zorrilla, S. E., J. R. Banga and R. Paul Singh (2003) Dynamic optimization of double-sided cooking of meat patties. J. Food Engineering 58(2):173-182.

  118. 2002


  119. Banga, J. R., K. J. Versyck and J. F. Van Impe (2002) Computation of optimal identification experiments for nonlinear dynamic process models: an stochastic global optimization approach. Industrial & Engineering Chemistry Research 41:2425-2430. (abstract)

  120. Wappling-Raaholt, B.; Scheerlinck, N.; Galt, S.; Banga, J. R.; Alonso, A.; Balsa-Canto, E.; Van Impe, J.; Ohlsson, T.; Nicolai, B. M (2002) A Combined Electromagnetic and Heat Transfer Model for Heating of Foods in Microwave Combination Ovens. Journal of Microwave Power and Electromagnetic Energy, 37(2):97-111. 15.

  121. Banga, J. R., E. Balsa-Canto, C. G. Moles and A. A. Alonso (2002) "Global optimization in food process engineering". En: COMPUTATIONAL TECHNIQUES IN FOOD ENGINEERING, pp. 155-169. Editorial CIMNE-UPC, Universidad Politécnica de Cataluña, Barcelona, ISBN 84-95999-13-7.

  122. Alonso, A. A., J. R. Banga and E. Balsa-Canto (2002) "Model reduction of complex food processes with applications in control and optimization". En: COMPUTATIONAL TECHNIQUES IN FOOD ENGINEERING, pp. 155-169. Editorial CIMNE-UPC, Universidad Politécnica de Cataluña, Barcelona, ISBN 84-95999-13-7.

  123. Alonso, A. A., B. E. Ydstie and J. R. Banga (2002) From irreversible thermodynamics to a robust control theory for distributed process systems. J. Process Control 12(4):507-517.

  124. Alonso, A. A., I. Kevrekidis, J. R. Banga and C. Frouzakis (2002) Optimal Sensor Location and Reduced Order Observer Design for Distributed Process Systems. Computer Aided Chemical Engineering 10:415-420.

  125. Balsa-Canto, Eva, Antonio A. Alonso y Julio R. Banga (2002) A novel, efficient and reliable method for thermal process design and optimization. Part 1: theory. J. Food Eng., 52:227-234.

  126. Balsa-Canto, Eva, Antonio A. Alonso y Julio R. Banga (2002) A novel, efficient and reliable method for thermal process design and optimization. Part 2: applications. J. Food Eng., 52:235-247.

  127. Balsa-Canto, E., Banga J.R., and Vassiliadis V.S. (2002) Dynamic optimization of a class of multistage systems using a hybrid stochastic-deterministic method. Chapter to appear in the book "Global Optimization - Selected Case Studies ", edited by Janos Pinter, Kluwer Academic Publishers.

  128. Balsa-Canto, E., V. Vassiliadis, A. A. Alonso and J. R. Banga (2002). Restricted second order information for the solution of optimal control problems using control vector parameterization. J. Process Control 12(ER2):243-255. 

    2001 AND PREVIOUS YEARS


  129. Balsa-Canto, E., Banga J.R., Alonso A.A. and Vassiliadis V.S. (2001) Dynamic optimization of chemical and biochemical processes using restricted second order information. Comp. & Chem. Eng. 25(4-6):539-546

  130. Banga, J. R., Z. Pan and R. Paul Singh (2001) On the optimal control of contact-cooking processes. Food & Bioproducts Processing 79(C3):145-151.

  131. Alonso, A. A., J. R. Banga and I Sanchez (2000). Passive control design for distributed process systems: theory and applications. AIChE J. 46(8):1593-1606.

  132. Balsa-Canto, E., J. R. Banga, A. A. Alonso and V. S. Vassiliadis (2000). Efficient optimal control of bioprocesses using second order information. Ind. Eng. Chem. Res. 39:4287-4295.

  133. Sanchez, I. A.A. Alonso, J.R. Banga (2000). Temperature control in microwave combination ovens. J. Food Eng. 46(1):21-29.

  134. Barton, P. I., J. R. Banga and S. Galan (2000). Optimization of hybrid discrete/continuous dynamic systems. Comput. Chem. Eng. 24(9-10):2171-2182.

  135. Vassiliadis, V.S., E. Balsa-Canto and J. R. Banga (1999). Second order sensitivities of general dynamic systems with application to optimal control problems. Chem. Eng. Sci. 54(17):3851-3860.

  136. Banga, J. R., R. Irizarry and W. D. Seider (1998). Stochastic optimization for optimal and model-predictive control. Comput. Chem. Eng., 22(4-5):603-612.

  137. Alonso, A. A., J. R. Banga and R. I .P. Martín (1998). Modeling and adaptive control of a batch sterilization process. Comput. Chem. Eng. 22(3):445-458.

  138. Alonso, A. A. and J. R. Banga (1998). Design of a class of stabilizing nonlinear state feedback controllers with bounded inputs. Ind. Eng. Chem. Res. 37(1):131-144.

  139. Carrasco, E.F. and J. R. Banga (1998) A hybrid method for the optimal control of chemical processes. IEE Conf. Publ. 455(Vol. 2): 925-930. The Institution of Electrical Engineers. ISSN: 0537-9989

  140. Banga, J. R., A. A. Alonso and R. Paul Singh (1997). Stochastic dynamic optimization of batch and semi-continuous bioprocesses. Biotechnol. Prog. 13(3):326-335.

  141. Carrasco, E. F. and J. R. Banga (1997). Dynamic optimization of batch reactors using adaptive stochastic algorithms. Ind. Eng. Chem. Res. 36(6):2252-2261.

  142. Alonso, A. A., J. R. Banga y R. I .P. Martín (1997). A complete dynamic model for the thermal processing of bioproducts in batch retorts and its application to controller design. Chem. Eng. Sci. 52(8):1307-1322.

  143. Banga, J.R., R. I. P. Martín and A. A. Alonso (1997). Dynamic optimization of food processing. En "Engineering & Food at ICEF 7", Vol. 2, p. M1-M4. Ed. Sheffield Academic Press. ISBN: 1-85075-814-X.

  144. Alonso, A.A., J. R. Banga and R. I. P. Martín (1997). Process control in food process engineering: state of the art and new challenges. En "Engineering & Food at ICEF 7", Vol. Supl., p. SM1-SM4. Ed. Sheffield Academic Press. ISBN: 1-85075-814-X.

  145. Alonso, A.A., J. R. Banga, J. M. Gallardo and R. I. P. Martín (1997). Design and implementation of optimal policies in the thermal processing of canned fish. En "Seafood from Producer to Consumer, Integrated Approach to Quality", J.B. Luten, T. Borresen y J. Oehlenschläger (Eds.) p. 361-365. Elsevier Science, Amsterdam. ISBN: 0-444-82224-0.

  146. Banga, J. R. and W.D. Seider (1996). Global optimization of chemical processes using stochastic algorithms. In "State of the Art in Global Optimization: Computational Methods and Applications ", C.A. Floudas and P. M. Pardalos (Eds.), p. 563-583. Kluwer Academic Publishers, Dordrecht, The Netherlands. ISBN 0-7923-3838-3.

  147. Torres, J.A., Bouzas, J., Kriby, C., Almonacid, S.F., Kantt, C.A., Simpson, R. and Banga, J.R. (1995). "Time-Temperature Effects on Microbial, Chemical and Sensory Changes During Cooling and Aging of Cheddar Cheese". In "Chemistry of Structure/Function Relationships in Cheese", E.L. Malin and M.H. Tunick (Eds.), Plenum Publishing Corp., New York.

  148. Banga, J. R., A. A. Alonso, R. I. P. Martín and R. Paul Singh (1994). "Optimal control of heat and mass transfer in food and bioproducts processing". Computers & Chem. Eng., 18:S699-S705.

  149. Banga J. R., and R. Paul Singh (1994). "Optimization of the air drying of foods". J. Food Engineering, 23:189-211

  150. Singh, R. P. and J. R. Banga (1994). "Recent advances in food process optimisation". Chemistry & Industry-London 13: 511-514.

  151. Banga, J. R., A. A. Alonso and R. P. Singh (1994). "Stochastic optimal control of fed-batch bioreactors". American Institute of Chemical Engineers (AIChE) Annual Meeting, San Francisco, November 1994.

  152. Banga, J.R., R. P. Martín and R. P. Singh (1994). "ICRS/DS: a computer package for the optimization of batch processes and its applications in food processing". In "Developments in Food Engineering", Part. 2, p. 730-732. Ed. Blackie Academic & Professional.

  153. Alonso, A. A., J.R. Banga and R. P. Martín (1994). "Different strategies for controlling pressure during the cooling stage in batch retorts". In "Developments in Food Engineering", Part. 2, p. 724-726. Ed. Blackie Academic & Professional.

  154. Alonso, A. A., R. P. Martín, N.V. Shukla and P.B. Desphande (1993). "On-line quality control of non-linear batch systems: application to thermal processing of canned foods". J. Food. Eng., 19: 275-289.

  155. Banga, J. R., A. A. Alonso, J. M. Gallardo and R.P. Martín (1993). "Mathematical modeling and simulation of the thermal processing of anisotropic and non homogeneous conduction heated canned foods: application to canned tuna". J. Food Engineering. 18(4):369-387

  156. Alonso, A. A., J. R. Banga, R.P. Martín and J. M. Gallardo (1993). "Control mediante ordenador del tratamiento térmico de conservas de alimentos en autoclaves de vapor". Spanish J. Food Sci. Technol. 33(1):29-41.

  157. Alonso, A. A., J. R. Banga and R.P. Martin (1993). "A new strategy for the control of the cooling stage of the sterilization process in steam retorts". Transac. of the IChemE 71C:197-205.

  158. Banga, J. R., A. A. Alonso, J. M. Gallardo and R.P. Martín (1993). "Kinetics of thermal degradation of thiamine and surface color in canned tuna". Z. Lebensm. Unters. Forsch., 197:127-131.

  159. Banga, J. R., A. A. Alonso, J. M. Gallardo and R.P. Martín (1992). "Degradation kinetics of available lysine and protein digestibility during thermal processing of tuna". J. Food Science, 56(4):931-934.

  160. Banga, J. R., R. P. Martín, J. M. Gallardo and J. J. Casares (1991). "Optimization of the thermal processing of conduction-heated canned foods: study of several objective functions". J. Food Engineering 14(1):25-51.

  161. Martín, R. P., J. R. Banga and J. M. Gallardo (1990). "Simulation of thermal processes in tuna can manufacture". In "Engineering and Food: physical properties and process control", Vol. 1, p. 848-856. Ed. Elsevier Sci. Pub.

  162. Martín, R. P., J. M. Gallardo, J. R. Banga and J. J. Casares (1989). "Determination of thermal conductivity, specific heat and thermal diffusivity of albacore (Thunnus alalunga)". Z. Lebensm. Unters. Forsch., 6(189):525-529.

  163. Casares, J. J. and J. R. Banga (1989). "Analysis and evaluation of a wastewater treatment plant model by stochastic optimization". Applied Math. Modelling, 13:420-424.

  164. Banga, J. R. and J. J. Casares 1987. ICRS: application to a wastewater treatment plant model. In "Process Optimisation" (IChemE Symposium Series No. 100), p. 183-192. The Institution of Chemical Engineers. Ed. Pergamon Press, Oxford (U.K.). ISBN:0-85295-205-8.